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trailing slash regexed out
[jalview.git]
/
src
/
jalview
/
io
/
VamsasAppDatastore.java
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
82e9fba
..
1964c2f
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-351,9
+351,9
@@
public class VamsasAppDatastore
}
}
}
}
}
}
-
- if (sq.getDBRef() != null)
+ if (sq.getDatasetSequence()==null && sq.getDBRef() != null)
{
{
+ // only sync database references for dataset sequences
DBRefEntry[] entries = sq.getDBRef();
jalview.datamodel.DBRefEntry dbentry;
for (int db = 0; db < entries.length; db++)
DBRefEntry[] entries = sq.getDBRef();
jalview.datamodel.DBRefEntry dbentry;
for (int db = 0; db < entries.length; db++)
@@
-628,7
+628,10
@@
public class VamsasAppDatastore
// of
// utf8
// translation
// of
// utf8
// translation
- ae.addValue(aa[i].annotations[a].value);
+ if (an.isGraph())
+ {
+ ae.addValue(aa[i].annotations[a].value);
+ }
ae.setPosition(a + 1);
if (aa[i].annotations[a].secondaryStructure != ' ')
{
ae.setPosition(a + 1);
if (aa[i].annotations[a].secondaryStructure != ' ')
{