for (int f = 0; al != null && f < al.length; f++)
{
skipList.put(al[f].getViewport().getSequenceSetId(), al[f]);
for (int f = 0; al != null && f < al.length; f++)
{
skipList.put(al[f].getViewport().getSequenceSetId(), al[f]);
{
// removeValignmentSequences(alignment, docseqs);
docseqs.removeAllElements();
{
// removeValignmentSequences(alignment, docseqs);
docseqs.removeAllElements();
// unbind alignment from view.
// create new binding and new alignment.
// mark trail on new alignment as being derived from old ?
// unbind alignment from view.
// create new binding and new alignment.
// mark trail on new alignment as being derived from old ?
String seqsetidobj = av.getSequenceSetId();
views = Desktop.getViewports(seqsetidobj);
Console.debug("Found " + (views == null ? " no " : "" + views.length)
String seqsetidobj = av.getSequenceSetId();
views = Desktop.getViewports(seqsetidobj);
Console.debug("Found " + (views == null ? " no " : "" + views.length)