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isAligned assertion (bug 0008144)
[jalview.git]
/
src
/
jalview
/
io
/
VamsasAppDatastore.java
diff --git
a/src/jalview/io/VamsasAppDatastore.java
b/src/jalview/io/VamsasAppDatastore.java
index
e313470
..
ac00b33
100644
(file)
--- a/
src/jalview/io/VamsasAppDatastore.java
+++ b/
src/jalview/io/VamsasAppDatastore.java
@@
-717,7
+717,7
@@
public class VamsasAppDatastore
/**
* very quick test to see if the viewport would be stored in the vamsas document.
/**
* very quick test to see if the viewport would be stored in the vamsas document.
- * Reasons for not storing include the unaligned flag being false.
+ * Reasons for not storing include the unaligned flag being false (for all sequences, including the hidden ones!)
* @param av
* @return true if alignment associated with this view will be stored in document.
*/
* @param av
* @return true if alignment associated with this view will be stored in document.
*/