- AlignmentPanel ap;\r
- AlignmentI al;\r
- CutAndPasteTransfer output = new CutAndPasteTransfer();\r
- int jobsRunning = 0;\r
-\r
- Vector suggestedIds = new Vector();\r
- /**\r
- * Creates a new WSWUBlastClient object.\r
- *\r
- * @param al DOCUMENT ME!\r
- * @param ids DOCUMENT ME!\r
- */\r
- public WSWUBlastClient(AlignmentPanel ap, AlignmentI al, ArrayList ids)\r
+ AlignmentPanel ap;\r
+ AlignmentI al;\r
+ CutAndPasteTransfer output = new CutAndPasteTransfer();\r
+ int jobsRunning = 0;\r
+\r
+ Vector suggestedIds = new Vector();\r
+ /**\r
+ * Creates a new WSWUBlastClient object.\r
+ *\r
+ * @param al DOCUMENT ME!\r
+ * @param ids DOCUMENT ME!\r
+ */\r
+ public WSWUBlastClient(AlignmentPanel ap, AlignmentI al, ArrayList ids)\r
+ {\r
+ this.ap = ap;\r
+ this.al = al;\r
+ output.setText(\r
+ "To display sequence features an exact Uniprot id with 100% sequence identity match must be entered."\r
+ + "\nIn order to display these features, try changing the names of your sequences to the ids suggested below."\r
+ + "\n\nRunning WSWUBlast at EBI."\r
+ + "\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R."\r
+ +\r
+ "\nSOAP-based services provided by the European Bioinformatics Institute."\r
+ + "\nNucleic Acids Res. 33(1):W25-W28 (2005));");\r
+\r
+ Desktop.addInternalFrame(output,\r
+ "BLASTing for unidentified sequences ", 800, 300);\r
+\r
+ for (int i = 0; i < ids.size(); i++)\r