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JAL-2629 add simple jackhmmer functionality
[jalview.git]
/
src
/
jalview
/
io
/
gff
/
Gff3Helper.java
diff --git
a/src/jalview/io/gff/Gff3Helper.java
b/src/jalview/io/gff/Gff3Helper.java
index
c7e1d7a
..
a25a014
100644
(file)
--- a/
src/jalview/io/gff/Gff3Helper.java
+++ b/
src/jalview/io/gff/Gff3Helper.java
@@
-39,6
+39,8
@@
import java.util.Map;
*/
public class Gff3Helper extends GffHelperBase
{
*/
public class Gff3Helper extends GffHelperBase
{
+ public static final String ALLELES = "alleles";
+
protected static final String TARGET = "Target";
protected static final String ID = "ID";
protected static final String TARGET = "Target";
protected static final String ID = "ID";
@@
-399,7
+401,7
@@
public class Gff3Helper extends GffHelperBase
/*
* Ensembl returns dna variants as 'alleles'
*/
/*
* Ensembl returns dna variants as 'alleles'
*/
- desc = StringUtils.listToDelimitedString(attributes.get("alleles"),
+ desc = StringUtils.listToDelimitedString(attributes.get(ALLELES),
",");
}
",");
}