+
+ if (!valid)
+ {
+ jalview.bin.Console.errPrintln(INVALID_GFF_ATTRIBUTE_FORMAT + s);
+ return map;
+ }
+
+ int i = 0;
+ while (i < fields.length - 1)
+ {
+ boolean lastPair = i == fields.length - 2;
+ String before = fields[i];
+ String after = fields[i + 1];
+
+ /*
+ * if 'key' looks like a,b,c then the last token is the
+ * key
+ */
+ String theKey = before.contains(COMMA)
+ ? before.substring(before.lastIndexOf(COMMA) + 1)
+ : before;
+
+ theKey = theKey.trim();
+ if (theKey.isEmpty())
+ {
+ jalview.bin.Console.errPrintln(INVALID_GFF_ATTRIBUTE_FORMAT + s);
+ map.clear();
+ return map;
+ }
+
+ /*
+ * if 'value' looks like a,b,c then all but the last token is the value,
+ * unless this is the last field (no more = to follow), in which case
+ * all of it makes up the value
+ */
+ String theValue = after.contains(COMMA) && !lastPair
+ ? after.substring(0, after.lastIndexOf(COMMA))
+ : after;
+ map.put(StringUtils.urlDecode(theKey, GFF_ENCODABLE),
+ StringUtils.urlDecode(theValue, GFF_ENCODABLE));
+ i += 1;
+ }
+