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JAL-2897 generate peptide variants for synonymous codon variants
[jalview.git]
/
src
/
jalview
/
io
/
gff
/
SequenceOntologyI.java
diff --git
a/src/jalview/io/gff/SequenceOntologyI.java
b/src/jalview/io/gff/SequenceOntologyI.java
index
c0570e0
..
10ca7ec
100644
(file)
--- a/
src/jalview/io/gff/SequenceOntologyI.java
+++ b/
src/jalview/io/gff/SequenceOntologyI.java
@@
-42,6
+42,12
@@
public interface SequenceOntologyI
// SO:0001060
public static final String SEQUENCE_VARIANT = "sequence_variant";
// SO:0001060
public static final String SEQUENCE_VARIANT = "sequence_variant";
+ // SO:0001819
+ public static final String SYNONYMOUS_VARIANT = "synonymous_variant";
+
+ // SO:0001992
+ public static final String NONSYNONYMOUS_VARIANT = "nonsynonymous_variant";
+
// SO:0000147
public static final String EXON = "exon";
// SO:0000147
public static final String EXON = "exon";