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JAL-1191 more terms added to SequenceOntologyLite
[jalview.git]
/
src
/
jalview
/
io
/
gff
/
SequenceOntologyLite.java
diff --git
a/src/jalview/io/gff/SequenceOntologyLite.java
b/src/jalview/io/gff/SequenceOntologyLite.java
index
173dea6
..
6719ae6
100644
(file)
--- a/
src/jalview/io/gff/SequenceOntologyLite.java
+++ b/
src/jalview/io/gff/SequenceOntologyLite.java
@@
-58,7
+58,18
@@
public class SequenceOntologyLite implements SequenceOntologyI
* no sub-types of exon or CDS yet encountered; add if needed
*/
{ "exon", "exon" },
* no sub-types of exon or CDS yet encountered; add if needed
*/
{ "exon", "exon" },
- { "CDS", "CDS" }
+ { "CDS", "CDS" },
+
+ /*
+ * used in exonerate GFF
+ */
+ { "protein_match", "protein_match"},
+ { "nucleotide_match", "nucleotide_match"},
+
+ /*
+ * used in InterProScan GFF
+ */
+ { "polypeptide", "polypeptide" }
};
// @formatter:on
};
// @formatter:on