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JAL-1705 further unit tests
[jalview.git]
/
src
/
jalview
/
io
/
gff
/
SequenceOntologyLite.java
diff --git
a/src/jalview/io/gff/SequenceOntologyLite.java
b/src/jalview/io/gff/SequenceOntologyLite.java
index
6719ae6
..
c0ae971
100644
(file)
--- a/
src/jalview/io/gff/SequenceOntologyLite.java
+++ b/
src/jalview/io/gff/SequenceOntologyLite.java
@@
-55,10
+55,13
@@
public class SequenceOntologyLite implements SequenceOntologyI
{ "structural_variant", "sequence_variant" },
/*
{ "structural_variant", "sequence_variant" },
/*
- * no sub-types of exon or CDS yet encountered; add if needed
+ * no sub-types of exon or CDS encountered in Ensembl
+ * a few added here for testing purposes
*/
{ "exon", "exon" },
*/
{ "exon", "exon" },
+ { "coding_exon", "exon" },
{ "CDS", "CDS" },
{ "CDS", "CDS" },
+ { "CDS_predicted", "CDS" },
/*
* used in exonerate GFF
/*
* used in exonerate GFF