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JAL-966 SearchResultsI now on viewmodels.AlignmentViewport rather than on SeqCanvas
[jalview.git]
/
src
/
jalview
/
io
/
vamsas
/
Sequencemapping.java
diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
31ccc48
..
160f5e2
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-386,7
+386,7
@@
public class Sequencemapping extends Rangetype
private void matchConjugateDBRefs(SequenceI from, SequenceI to,
jalview.util.MapList smap)
{
private void matchConjugateDBRefs(SequenceI from, SequenceI to,
jalview.util.MapList smap)
{
- if (from.getDBRef() == null && to.getDBRef() == null)
+ if (from.getDBRefs() == null && to.getDBRefs() == null)
{
if (jalview.bin.Cache.log.isDebugEnabled())
{
{
if (jalview.bin.Cache.log.isDebugEnabled())
{
@@
-400,11
+400,11
@@
public class Sequencemapping extends Rangetype
jalview.bin.Cache.log.debug("Matching conjugate refs for "
+ from.getName() + " and " + to.getName());
}
jalview.bin.Cache.log.debug("Matching conjugate refs for "
+ from.getName() + " and " + to.getName());
}
- jalview.datamodel.DBRefEntry[] fdb = from.getDBRef();
+ jalview.datamodel.DBRefEntry[] fdb = from.getDBRefs();
jalview.datamodel.DBRefEntry[] tdb = new jalview.datamodel.DBRefEntry[to
jalview.datamodel.DBRefEntry[] tdb = new jalview.datamodel.DBRefEntry[to
- .getDBRef().length];
- int tdblen = to.getDBRef().length;
- System.arraycopy(to.getDBRef(), 0, tdb, 0, tdblen);
+ .getDBRefs().length];
+ int tdblen = to.getDBRefs().length;
+ System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen);
Vector matched = new Vector();
jalview.util.MapList smapI = smap.getInverse();
for (int f = 0; f < fdb.length; f++)
Vector matched = new Vector();
jalview.util.MapList smapI = smap.getInverse();
for (int f = 0; f < fdb.length; f++)