}
// LATER: deal sensibly with multiple inputs
Input vInput = tp.getEntry(pe).getInput(0);
// is this the whole alignment or a specific set of sequences ?
if (vInput.getObjRefCount() == 0)
{
}
// LATER: deal sensibly with multiple inputs
Input vInput = tp.getEntry(pe).getInput(0);
// is this the whole alignment or a specific set of sequences ?
if (vInput.getObjRefCount() == 0)
{