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JAL-3691 toUpperCase(Locale.ROOT) for all standard file format operations
[jalview.git]
/
src
/
jalview
/
io
/
vcf
/
VCFLoader.java
diff --git
a/src/jalview/io/vcf/VCFLoader.java
b/src/jalview/io/vcf/VCFLoader.java
index
13d7ae8
..
d6a530b
100644
(file)
--- a/
src/jalview/io/vcf/VCFLoader.java
+++ b/
src/jalview/io/vcf/VCFLoader.java
@@
-48,6
+48,7
@@
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
+import java.util.Locale;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
@@
-569,7
+570,7
@@
public class VCFLoader
{
for (Pattern p : filters)
{
{
for (Pattern p : filters)
{
- if (p.matcher(id.toUpperCase()).matches())
+ if (p.matcher(id.toUpperCase(Locale.ROOT)).matches())
{
return true;
}
{
return true;
}
@@
-663,7
+664,7
@@
public class VCFLoader
{
try
{
{
try
{
- patterns.add(Pattern.compile(token.toUpperCase()));
+ patterns.add(Pattern.compile(token.toUpperCase(Locale.ROOT)));
} catch (PatternSyntaxException e)
{
System.err.println("Invalid pattern ignored: " + token);
} catch (PatternSyntaxException e)
{
System.err.println("Invalid pattern ignored: " + token);