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JAL-2674 Rewrote propagateInsertions
[jalview.git]
/
src
/
jalview
/
javascript
/
JalviewLiteJsApi.java
diff --git
a/src/jalview/javascript/JalviewLiteJsApi.java
b/src/jalview/javascript/JalviewLiteJsApi.java
index
1de9303
..
b5811aa
100644
(file)
--- a/
src/jalview/javascript/JalviewLiteJsApi.java
+++ b/
src/jalview/javascript/JalviewLiteJsApi.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-73,7
+73,8
@@
public interface JalviewLiteJsApi
* @return String list of selected sequence IDs, each terminated by the given
* separator
*/
* @return String list of selected sequence IDs, each terminated by the given
* separator
*/
- public abstract String getSelectedSequencesFrom(AlignFrame alf, String sep);
+ public abstract String getSelectedSequencesFrom(AlignFrame alf,
+ String sep);
/**
*
/**
*
@@
-120,7
+121,8
@@
public interface JalviewLiteJsApi
* @param sep
* separator between toselect fields
*/
* @param sep
* separator between toselect fields
*/
- public abstract void select(String sequenceIds, String columns, String sep);
+ public abstract void select(String sequenceIds, String columns,
+ String sep);
/**
* select regions of the given alignment frame
/**
* select regions of the given alignment frame
@@
-175,8
+177,8
@@
public interface JalviewLiteJsApi
* @return selected sequences as flat file or empty string if there was no
* current selection
*/
* @return selected sequences as flat file or empty string if there was no
* current selection
*/
- public abstract String getSelectedSequencesAsAlignmentFrom(
- AlignFrame alf, String format, String suffix);
+ public abstract String getSelectedSequencesAsAlignmentFrom(AlignFrame alf,
+ String format, String suffix);
/**
* get a separator separated list of sequence IDs reflecting the order of the
/**
* get a separator separated list of sequence IDs reflecting the order of the
@@
-300,7
+302,8
@@
public interface JalviewLiteJsApi
* @param alf
* @param annotation
*/
* @param alf
* @param annotation
*/
- public abstract void loadAnnotationFrom(AlignFrame alf, String annotation);
+ public abstract void loadAnnotationFrom(AlignFrame alf,
+ String annotation);
/**
* parse the given string as a jalview feature or GFF annotation file and
/**
* parse the given string as a jalview feature or GFF annotation file and
@@
-454,7
+457,8
@@
public interface JalviewLiteJsApi
* Jmol (e.g. first one is frame 1, second is frame 2, etc).
* @see jalview.javascript.MouseOverStructureListener
*/
* Jmol (e.g. first one is frame 1, second is frame 2, etc).
* @see jalview.javascript.MouseOverStructureListener
*/
- public abstract void setStructureListener(String listener, String modelSet);
+ public abstract void setStructureListener(String listener,
+ String modelSet);
/**
* remove any callback using the given listener function and associated with
/**
* remove any callback using the given listener function and associated with
@@
-567,8
+571,8
@@
public interface JalviewLiteJsApi
* @see jalview.appletgui.AlignFrame#setFeatureGroupState(java.lang.String[],
* boolean)
*/
* @see jalview.appletgui.AlignFrame#setFeatureGroupState(java.lang.String[],
* boolean)
*/
- public abstract void setFeatureGroupStateOn(AlignFrame alf,
- String groups, boolean state);
+ public abstract void setFeatureGroupStateOn(AlignFrame alf, String groups,
+ boolean state);
public abstract void setFeatureGroupState(String groups, boolean state);
public abstract void setFeatureGroupState(String groups, boolean state);