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JAL-1725 parse atomSpec with submodel; debug output removed
[jalview.git]
/
src
/
jalview
/
jbgui
/
GPCAPanel.java
diff --git
a/src/jalview/jbgui/GPCAPanel.java
b/src/jalview/jbgui/GPCAPanel.java
index
e2ad178
..
9fa7d06
100755
(executable)
--- a/
src/jalview/jbgui/GPCAPanel.java
+++ b/
src/jalview/jbgui/GPCAPanel.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
*
* This file is part of Jalview.
*
@@
-55,7
+55,7
@@
public class GPCAPanel extends JInternalFrame
JMenu fileMenu = new JMenu();
JMenu saveMenu = new JMenu();
JMenu fileMenu = new JMenu();
JMenu saveMenu = new JMenu();
-
+
protected JMenu scoreMatrixMenu = new JMenu();
JMenuItem eps = new JMenuItem();
protected JMenu scoreMatrixMenu = new JMenu();
JMenuItem eps = new JMenuItem();
@@
-194,7
+194,8
@@
public class GPCAPanel extends JInternalFrame
outputPoints_actionPerformed(e);
}
});
outputPoints_actionPerformed(e);
}
});
- outputProjPoints.setText(MessageManager.getString("label.output_transformed_points") + "...");
+ outputProjPoints.setText(MessageManager
+ .getString("label.output_transformed_points") + "...");
outputProjPoints.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
outputProjPoints.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@
-225,7
+226,8
@@
public class GPCAPanel extends JInternalFrame
{
}
});
{
}
});
- scoreMatrixMenu.setText(MessageManager.getString("label.select_score_model"));
+ scoreMatrixMenu.setText(MessageManager
+ .getString("label.select_score_model"));
scoreMatrixMenu.addMenuListener(new MenuListener()
{
public void menuSelected(MenuEvent e)
scoreMatrixMenu.addMenuListener(new MenuListener()
{
public void menuSelected(MenuEvent e)
@@
-250,7
+252,8
@@
public class GPCAPanel extends JInternalFrame
}
});
print.setText(MessageManager.getString("action.print"));
}
});
print.setText(MessageManager.getString("action.print"));
- bgcolour.setText(MessageManager.getString("label.background_colour") + "...");
+ bgcolour.setText(MessageManager.getString("label.background_colour")
+ + "...");
bgcolour.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
bgcolour.addActionListener(new ActionListener()
{
public void actionPerformed(ActionEvent e)
@@
-266,9
+269,11
@@
public class GPCAPanel extends JInternalFrame
originalSeqData_actionPerformed(e);
}
});
originalSeqData_actionPerformed(e);
}
});
- associateViewsMenu.setText(MessageManager.getString("label.associate_nodes_with"));
+ associateViewsMenu.setText(MessageManager
+ .getString("label.associate_nodes_with"));
calcSettings.setText(MessageManager.getString("action.change_params"));
calcSettings.setText(MessageManager.getString("action.change_params"));
- nuclSetting.setText(MessageManager.getString("label.nucleotide_matrix"));
+ nuclSetting
+ .setText(MessageManager.getString("label.nucleotide_matrix"));
protSetting.setText(MessageManager.getString("label.protein_matrix"));
nuclSetting.addActionListener(new ActionListener()
{
protSetting.setText(MessageManager.getString("label.protein_matrix"));
nuclSetting.addActionListener(new ActionListener()
{
@@
-288,7
+293,8
@@
public class GPCAPanel extends JInternalFrame
protSetting_actionPerfomed(arg0);
}
});
protSetting_actionPerfomed(arg0);
}
});
- jvVersionSetting.setText(MessageManager.getString("label.jalview_pca_calculation"));
+ jvVersionSetting.setText(MessageManager
+ .getString("label.jalview_pca_calculation"));
jvVersionSetting.addActionListener(new ActionListener()
{
@Override
jvVersionSetting.addActionListener(new ActionListener()
{
@Override
@@
-336,7
+342,7
@@
public class GPCAPanel extends JInternalFrame
protected void scoreMatrix_menuSelected()
{
// TODO Auto-generated method stub
protected void scoreMatrix_menuSelected()
{
// TODO Auto-generated method stub
-
+
}
protected void resetButton_actionPerformed(ActionEvent e)
}
protected void resetButton_actionPerformed(ActionEvent e)