+ jPanel2.add(annotations);\r
+ jPanel2.add(seqLimit);\r
+ jPanel2.add(fontLabel);\r
+ jPanel2.add(smoothFont);\r
+ jPanel2.add(wrap);\r
+ jPanel2.add(gapLabel);\r
+ jPanel2.add(colourLabel);\r
+ jPanel2.add(sortLabel);\r
+ jPanel2.add(startupCheckbox);\r
+ visualTab.add(sortby);\r
+ visualTab.add(gapSymbolCB);\r
+ visualTab.add(colour);\r
+ visualTab.add(fontNameCB);\r
+ visualTab.add(fontSizeCB);\r
+ visualTab.add(fontStyleCB);\r
+ visualTab.add(jPanel3);\r
+ visualTab.add(startupFileTextfield);\r
+ jPanel3.add(conservation);\r
+ jPanel3.add(identity);\r
+ jPanel3.add(quality);\r
+ visualTab.add(jPanel2);\r
+ linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
+ editLinkButtons.add(newLink, null);\r
+ editLinkButtons.add(editLink, null);\r
+ editLinkButtons.add(deleteLink, null);\r
+ linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
+ linkScrollPane.getViewport().add(linkPanel2, null);\r
+ linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
+ linkPanel2.add(linkNameList, BorderLayout.WEST);\r
+ okCancelPanel.add(ok);\r
+ okCancelPanel.add(cancel);\r
+ this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
+\r
+ this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
+ jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(0, 2, 4, 0), 5, 0));\r
+ jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 0, 4, 0), 11, 6));\r
+ connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(16, 0, 0, 12), 359, -17));\r
+ connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
+ , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
+ new Insets(21, 0, 35, 12), 4, 6));\r
+ connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
+ new Insets(16, 0, 0, 0), 5, 1));\r
+ jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 2), 54, 1));\r
+ jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(0, 2, 4, 0), 263, 1));\r
+ connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
+ , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
+ new Insets(15, 0, 0, 15), 307, 1));\r
+\r
+\r
+ jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
+ , GridBagConstraints.WEST,\r
+ GridBagConstraints.NONE,\r
+ new Insets(0, 2, 5, 185), 2,\r
+ -4));\r