complementConsensus = av.getComplementConsensusHash();
hStrucConsensus = av.getRnaStructureConsensusHash();
av_ignoreGapsConsensus = av.isIgnoreGapsConsensus();
complementConsensus = av.getComplementConsensusHash();
hStrucConsensus = av.getRnaStructureConsensusHash();
av_ignoreGapsConsensus = av.isIgnoreGapsConsensus();
// TODO? group consensus for cDNA complement
return AAFrequency.extractProfile(
aa.groupRef.getConsensusData().get(column),
// TODO? group consensus for cDNA complement
return AAFrequency.extractProfile(
aa.groupRef.getConsensusData().get(column),