+ /*
+ * colour for gaps (unless overridden by colour scheme)
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color gapColour;
+
+ /*
+ * colour for residues if no colour scheme set (before feature colouring)
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color residueColour;
+
+ /*
+ * colour for hidden regions
+ * - as set in Preferences, _or_ read from a project file
+ */
+ Color hiddenColour;
+
+ /**
+ * Constructor without colour settings (used by applet)
+ *
+ * @deprecated
+ */
+ @Deprecated
+ public OverviewResColourFinder()
+ {
+ this(Color.lightGray, Color.white, Color.darkGray.darker());
+ }
+
+ /**
+ * Constructor given default colours for gaps, residues and hidden regions
+ *
+ * @param gaps
+ * @param residues
+ * @param hidden
+ */
+ public OverviewResColourFinder(Color gaps, Color residues, Color hidden)
+ {
+ gapColour = gaps;
+ residueColour = residues;
+ hiddenColour = hidden;
+ }
+