- return (isGap ? GAP_COLOUR : RESIDUE_COLOUR);
- }
- return (isGap && !shader.getColourScheme().hasGapColour() ? GAP_COLOUR
- : shader.findColourInt(currentChar, i, seq));
- }
-
- /**
- * For test suite only.
- */
- @Override
- public Color getResidueColour(boolean showBoxes, ResidueShaderI shader,
- SequenceGroup[] allGroups, final SequenceI seq, int i,
- FeatureColourFinder finder)
- {
- return new Color(getResidueColourInt(showBoxes, shader, allGroups, seq,
- i, finder));
- }
-
-
- public int getResidueColourInt(boolean showBoxes, ResidueShaderI shader,
- SequenceGroup[] allGroups, final SequenceI seq, int i,
- FeatureColourFinder finder)
- {
-
- int c = seq.getColor(i);
- if (c != 0)
- {
- return c;