-public class AlcodMap implements java.io.Serializable
-{
-
- // --------------------------/
- // - Class/Member Variables -/
- // --------------------------/
-
- /**
- * internal jalview id for the dnasq for this mapping.
- *
- */
- private java.lang.String _dnasq;
-
- /**
- * a Mapping entry and an associated protein sequence
- *
- */
- private jalview.schemabinding.version2.Mapping _mapping;
-
- // ----------------/
- // - Constructors -/
- // ----------------/
-
- public AlcodMap()
- {
- super();
- }
-
- // -----------/
- // - Methods -/
- // -----------/
-
- /**
- * Returns the value of field 'dnasq'. The field 'dnasq' has the following
- * description: internal jalview id for the dnasq for this mapping.
- *
- *
- * @return the value of field 'Dnasq'.
- */
- public java.lang.String getDnasq()
- {
- return this._dnasq;
- }
-
- /**
- * Returns the value of field 'mapping'. The field 'mapping' has the following
- * description: a Mapping entry and an associated protein sequence
- *
- *
- * @return the value of field 'Mapping'.
- */
- public jalview.schemabinding.version2.Mapping getMapping()
- {
- return this._mapping;
- }
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid()
- {
- try
- {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex)
- {
- return false;
+public class AlcodMap implements java.io.Serializable {
+
+
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
+
+ /**
+ * internal jalview id for the dnasq for this mapping.
+ *
+ */
+ private java.lang.String _dnasq;
+
+ /**
+ * a Mapping entry and an associated protein sequence
+ *
+ */
+ private jalview.schemabinding.version2.Mapping _mapping;
+
+
+ //----------------/
+ //- Constructors -/
+ //----------------/
+
+ public AlcodMap() {
+ super();
+ }
+
+
+ //-----------/
+ //- Methods -/
+ //-----------/
+
+ /**
+ * Returns the value of field 'dnasq'. The field 'dnasq' has
+ * the following description: internal jalview id for the dnasq
+ * for this mapping.
+ *
+ *
+ * @return the value of field 'Dnasq'.
+ */
+ public java.lang.String getDnasq(
+ ) {
+ return this._dnasq;
+ }
+
+ /**
+ * Returns the value of field 'mapping'. The field 'mapping'
+ * has the following description: a Mapping entry and an
+ * associated protein sequence
+ *
+ *
+ * @return the value of field 'Mapping'.
+ */
+ public jalview.schemabinding.version2.Mapping getMapping(
+ ) {
+ return this._mapping;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid(
+ ) {
+ try {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void marshal(
+ final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException if an IOException occurs during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ */
+ public void marshal(
+ final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'dnasq'. The field 'dnasq' has the
+ * following description: internal jalview id for the dnasq for
+ * this mapping.
+ *
+ *
+ * @param dnasq the value of field 'dnasq'.
+ */
+ public void setDnasq(
+ final java.lang.String dnasq) {
+ this._dnasq = dnasq;
+ }
+
+ /**
+ * Sets the value of field 'mapping'. The field 'mapping' has
+ * the following description: a Mapping entry and an associated
+ * protein sequence
+ *
+ *
+ * @param mapping the value of field 'mapping'.
+ */
+ public void setMapping(
+ final jalview.schemabinding.version2.Mapping mapping) {
+ this._mapping = mapping;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @return the unmarshaled
+ * jalview.schemabinding.version2.AlcodMap
+ */
+ public static jalview.schemabinding.version2.AlcodMap unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ return (jalview.schemabinding.version2.AlcodMap) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodMap.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void validate(
+ )
+ throws org.exolab.castor.xml.ValidationException {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);