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Save annotation colours, hideConsevation etc, graphGroups
[jalview.git]
/
src
/
jalview
/
schemabinding
/
version2
/
AnnotationElement.java
diff --git
a/src/jalview/schemabinding/version2/AnnotationElement.java
b/src/jalview/schemabinding/version2/AnnotationElement.java
index
8c91439
..
2507197
100755
(executable)
--- a/
src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/
src/jalview/schemabinding/version2/AnnotationElement.java
@@
-44,6
+44,16
@@
public class AnnotationElement implements java.io.Serializable {
private boolean _has_position;
\r
\r
/**
\r
private boolean _has_position;
\r
\r
/**
\r
+ * Field _colour
\r
+ */
\r
+ private int _colour;
\r
+
\r
+ /**
\r
+ * keeps track of state for field: _colour
\r
+ */
\r
+ private boolean _has_colour;
\r
+
\r
+ /**
\r
* Field _displayCharacter
\r
*/
\r
private java.lang.String _displayCharacter;
\r
* Field _displayCharacter
\r
*/
\r
private java.lang.String _displayCharacter;
\r
@@
-83,6
+93,15
@@
public class AnnotationElement implements java.io.Serializable {
//-----------/
\r
\r
/**
\r
//-----------/
\r
\r
/**
\r
+ * Method deleteColour
\r
+ *
\r
+ */
\r
+ public void deleteColour()
\r
+ {
\r
+ this._has_colour= false;
\r
+ } //-- void deleteColour()
\r
+
\r
+ /**
\r
* Method deletePosition
\r
*
\r
*/
\r
* Method deletePosition
\r
*
\r
*/
\r
@@
-101,6
+120,17
@@
public class AnnotationElement implements java.io.Serializable {
} //-- void deleteValue()
\r
\r
/**
\r
} //-- void deleteValue()
\r
\r
/**
\r
+ * Returns the value of field 'colour'.
\r
+ *
\r
+ * @return int
\r
+ * @return the value of field 'colour'.
\r
+ */
\r
+ public int getColour()
\r
+ {
\r
+ return this._colour;
\r
+ } //-- int getColour()
\r
+
\r
+ /**
\r
* Returns the value of field 'description'.
\r
*
\r
* @return String
\r
* Returns the value of field 'description'.
\r
*
\r
* @return String
\r
@@
-156,6
+186,18
@@
public class AnnotationElement implements java.io.Serializable {
} //-- float getValue()
\r
\r
/**
\r
} //-- float getValue()
\r
\r
/**
\r
+ * Method hasColour
\r
+ *
\r
+ *
\r
+ *
\r
+ * @return boolean
\r
+ */
\r
+ public boolean hasColour()
\r
+ {
\r
+ return this._has_colour;
\r
+ } //-- boolean hasColour()
\r
+
\r
+ /**
\r
* Method hasPosition
\r
*
\r
*
\r
* Method hasPosition
\r
*
\r
*
\r
@@
-226,6
+268,17
@@
public class AnnotationElement implements java.io.Serializable {
} //-- void marshal(org.xml.sax.ContentHandler)
\r
\r
/**
\r
} //-- void marshal(org.xml.sax.ContentHandler)
\r
\r
/**
\r
+ * Sets the value of field 'colour'.
\r
+ *
\r
+ * @param colour the value of field 'colour'.
\r
+ */
\r
+ public void setColour(int colour)
\r
+ {
\r
+ this._colour = colour;
\r
+ this._has_colour = true;
\r
+ } //-- void setColour(int)
\r
+
\r
+ /**
\r
* Sets the value of field 'description'.
\r
*
\r
* @param description the value of field 'description'.
\r
* Sets the value of field 'description'.
\r
*
\r
* @param description the value of field 'description'.
\r