-public class Feature implements java.io.Serializable {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _begin\r
- */\r
- private int _begin;\r
-\r
- /**\r
- * keeps track of state for field: _begin\r
- */\r
- private boolean _has_begin;\r
-\r
- /**\r
- * Field _end\r
- */\r
- private int _end;\r
-\r
- /**\r
- * keeps track of state for field: _end\r
- */\r
- private boolean _has_end;\r
-\r
- /**\r
- * Field _type\r
- */\r
- private java.lang.String _type;\r
-\r
- /**\r
- * Field _description\r
- */\r
- private java.lang.String _description;\r
-\r
- /**\r
- * Field _status\r
- */\r
- private java.lang.String _status;\r
-\r
- /**\r
- * Field _featureGroup\r
- */\r
- private java.lang.String _featureGroup;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public Feature() {\r
- super();\r
- } //-- jalview.schemabinding.version2.Feature()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method deleteBegin\r
- * \r
- */\r
- public void deleteBegin()\r
- {\r
- this._has_begin= false;\r
- } //-- void deleteBegin() \r
-\r
- /**\r
- * Method deleteEnd\r
- * \r
- */\r
- public void deleteEnd()\r
- {\r
- this._has_end= false;\r
- } //-- void deleteEnd() \r
-\r
- /**\r
- * Returns the value of field 'begin'.\r
- * \r
- * @return int\r
- * @return the value of field 'begin'.\r
- */\r
- public int getBegin()\r
- {\r
- return this._begin;\r
- } //-- int getBegin() \r
-\r
- /**\r
- * Returns the value of field 'description'.\r
- * \r
- * @return String\r
- * @return the value of field 'description'.\r
- */\r
- public java.lang.String getDescription()\r
- {\r
- return this._description;\r
- } //-- java.lang.String getDescription() \r
-\r
- /**\r
- * Returns the value of field 'end'.\r
- * \r
- * @return int\r
- * @return the value of field 'end'.\r
- */\r
- public int getEnd()\r
- {\r
- return this._end;\r
- } //-- int getEnd() \r
-\r
- /**\r
- * Returns the value of field 'featureGroup'.\r
- * \r
- * @return String\r
- * @return the value of field 'featureGroup'.\r
- */\r
- public java.lang.String getFeatureGroup()\r
- {\r
- return this._featureGroup;\r
- } //-- java.lang.String getFeatureGroup() \r
-\r
- /**\r
- * Returns the value of field 'status'.\r
- * \r
- * @return String\r
- * @return the value of field 'status'.\r
- */\r
- public java.lang.String getStatus()\r
- {\r
- return this._status;\r
- } //-- java.lang.String getStatus() \r
-\r
- /**\r
- * Returns the value of field 'type'.\r
- * \r
- * @return String\r
- * @return the value of field 'type'.\r
- */\r
- public java.lang.String getType()\r
- {\r
- return this._type;\r
- } //-- java.lang.String getType() \r
-\r
- /**\r
- * Method hasBegin\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasBegin()\r
- {\r
- return this._has_begin;\r
- } //-- boolean hasBegin() \r
-\r
- /**\r
- * Method hasEnd\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean hasEnd()\r
- {\r
- return this._has_end;\r
- } //-- boolean hasEnd() \r
-\r
- /**\r
- * Method isValid\r
- * \r
- * \r
- * \r
- * @return boolean\r
- */\r
- public boolean isValid()\r
- {\r
- try {\r
- validate();\r
- }\r
- catch (org.exolab.castor.xml.ValidationException vex) {\r
- return false;\r
- }\r
- return true;\r
- } //-- boolean isValid() \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param out\r
- */\r
- public void marshal(java.io.Writer out)\r
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
-\r
- /**\r
- * Method marshal\r
- * \r
- * \r
- * \r
- * @param handler\r
- */\r
- public void marshal(org.xml.sax.ContentHandler handler)\r
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
- {\r
- \r
- Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
-\r
- /**\r
- * Sets the value of field 'begin'.\r
- * \r
- * @param begin the value of field 'begin'.\r
- */\r
- public void setBegin(int begin)\r
- {\r
- this._begin = begin;\r
- this._has_begin = true;\r
- } //-- void setBegin(int) \r
-\r
- /**\r
- * Sets the value of field 'description'.\r
- * \r
- * @param description the value of field 'description'.\r
- */\r
- public void setDescription(java.lang.String description)\r
- {\r
- this._description = description;\r
- } //-- void setDescription(java.lang.String) \r
-\r
- /**\r
- * Sets the value of field 'end'.\r
- * \r
- * @param end the value of field 'end'.\r
- */\r
- public void setEnd(int end)\r
+public class Feature\r
+ implements java.io.Serializable\r
+{\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _begin\r
+ */\r
+ private int _begin;\r
+\r
+ /**\r
+ * keeps track of state for field: _begin\r
+ */\r
+ private boolean _has_begin;\r
+\r
+ /**\r
+ * Field _end\r
+ */\r
+ private int _end;\r
+\r
+ /**\r
+ * keeps track of state for field: _end\r
+ */\r
+ private boolean _has_end;\r
+\r
+ /**\r
+ * Field _type\r
+ */\r
+ private java.lang.String _type;\r
+\r
+ /**\r
+ * Field _description\r
+ */\r
+ private java.lang.String _description;\r
+\r
+ /**\r
+ * Field _status\r
+ */\r
+ private java.lang.String _status;\r
+\r
+ /**\r
+ * Field _featureGroup\r
+ */\r
+ private java.lang.String _featureGroup;\r
+\r
+ /**\r
+ * Field _score\r
+ */\r
+ private float _score;\r
+\r
+ /**\r
+ * keeps track of state for field: _score\r
+ */\r
+ private boolean _has_score;\r
+\r
+ /**\r
+ * Field _otherDataList\r
+ */\r
+ private java.util.Vector _otherDataList;\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public Feature()\r
+ {\r
+ super();\r
+ _otherDataList = new Vector();\r
+ } //-- jalview.schemabinding.version2.Feature()\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method addOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param vOtherData\r
+ */\r
+ public void addOtherData(jalview.schemabinding.version2.OtherData vOtherData)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _otherDataList.addElement(vOtherData);\r
+ } //-- void addOtherData(jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Method addOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @param vOtherData\r
+ */\r
+ public void addOtherData(int index,\r
+ jalview.schemabinding.version2.OtherData vOtherData)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _otherDataList.insertElementAt(vOtherData, index);\r
+ } //-- void addOtherData(int, jalview.schemabinding.version2.OtherData)\r
+\r
+ /**\r
+ * Method deleteBegin\r
+ *\r
+ */\r
+ public void deleteBegin()\r
+ {\r
+ this._has_begin = false;\r
+ } //-- void deleteBegin()\r
+\r
+ /**\r
+ * Method deleteEnd\r
+ *\r
+ */\r
+ public void deleteEnd()\r
+ {\r
+ this._has_end = false;\r
+ } //-- void deleteEnd()\r
+\r
+ /**\r
+ * Method deleteScore\r
+ *\r
+ */\r
+ public void deleteScore()\r
+ {\r
+ this._has_score = false;\r
+ } //-- void deleteScore()\r
+\r
+ /**\r
+ * Method enumerateOtherData\r
+ *\r
+ *\r
+ *\r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateOtherData()\r
+ {\r
+ return _otherDataList.elements();\r
+ } //-- java.util.Enumeration enumerateOtherData()\r
+\r
+ /**\r
+ * Returns the value of field 'begin'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'begin'.\r
+ */\r
+ public int getBegin()\r
+ {\r
+ return this._begin;\r
+ } //-- int getBegin()\r
+\r
+ /**\r
+ * Returns the value of field 'description'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'description'.\r
+ */\r
+ public java.lang.String getDescription()\r
+ {\r
+ return this._description;\r
+ } //-- java.lang.String getDescription()\r
+\r
+ /**\r
+ * Returns the value of field 'end'.\r
+ *\r
+ * @return int\r
+ * @return the value of field 'end'.\r
+ */\r
+ public int getEnd()\r
+ {\r
+ return this._end;\r
+ } //-- int getEnd()\r
+\r
+ /**\r
+ * Returns the value of field 'featureGroup'.\r
+ *\r
+ * @return String\r
+ * @return the value of field 'featureGroup'.\r
+ */\r
+ public java.lang.String getFeatureGroup()\r
+ {\r
+ return this._featureGroup;\r
+ } //-- java.lang.String getFeatureGroup()\r
+\r
+ /**\r
+ * Method getOtherData\r
+ *\r
+ *\r
+ *\r
+ * @param index\r
+ * @return OtherData\r
+ */\r
+ public jalview.schemabinding.version2.OtherData getOtherData(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ( (index < 0) || (index > _otherDataList.size()))\r