- //-- _aligned\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);\r
+ //-- initialize element descriptors\r
+ \r
+ //-- _sequenceList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteAligned();\r
- return;\r
- }\r
- target.setAligned( ((java.lang.Boolean)value).booleanValue());\r
+ target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r
- //-- initialize element descriptors\r
- \r
- //-- _sequenceList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
+ //-- _annotationList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r
- //-- _annotationList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
+ //-- _sequenceSetPropertiesList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
public java.lang.Object getValue( java.lang.Object object ) \r
throws IllegalStateException\r
{\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
}\r
public void setValue( java.lang.Object object, java.lang.Object value) \r
throws IllegalStateException, IllegalArgumentException\r
{\r
try {\r
SequenceSet target = (SequenceSet) object;\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r
}\r
catch (java.lang.Exception ex) {\r
throw new IllegalStateException(ex.toString());\r
}\r
}\r
public java.lang.Object newInstance( java.lang.Object parent ) {\r