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JAL-1065 JAL-1066 - use direct object reference rather then index into alignment
[jalview.git]
/
src
/
jalview
/
schemes
/
Blosum62ColourScheme.java
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
c511ded
..
27b8996
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-20,7
+20,7
@@
package jalview.schemes;
import jalview.analysis.AAFrequency;
import java.awt.Color;
import jalview.analysis.AAFrequency;
import java.awt.Color;
-
+import jalview.datamodel.SequenceI;
public class Blosum62ColourScheme extends ResidueColourScheme
{
public Blosum62ColourScheme()
public class Blosum62ColourScheme extends ResidueColourScheme
{
public Blosum62ColourScheme()
@@
-29,7
+29,7
@@
public class Blosum62ColourScheme extends ResidueColourScheme
}
@Override
}
@Override
- public Color findColour(char res, int j, int sequenceIndex)
+ public Color findColour(char res, int j, SequenceI seq)
{
if ('a' <= res && res <= 'z')
{
{
if ('a' <= res && res <= 'z')
{