- if (!s.equals("-") && !s.equals(".") && !s.equals(" "))\r
- {\r
- String max = av.getVisibleConsensus().charAt(j) + "";\r
+ Hashtable hash = (Hashtable)consensus.elementAt(j);\r
+\r
+ if (!jalview.util.Comparison.isGap((s.charAt(0))))\r
+ {\r
+ String max = (String)hash.get("maxResidue");\r
+\r
+ if (max.indexOf(s)>-1)\r
+ return new Color(154, 154, 255);\r
+ else {\r