- if (s.equals(max))\r
- return new Color(154, 154, 255);\r
- else if (ResidueProperties.getBLOSUM62(max, s) > 0)\r
- return new Color(204, 204, 255);\r
- else\r
- return Color.white;\r
+ if ( (threshold != 0) && !aboveThreshold(s, j))\r
+ {\r
+ return Color.white;\r
+ }\r
+\r
+ if (!jalview.util.Comparison.isGap( res ))\r
+ {\r
+ String max = (String) consensus[j].get("maxResidue");\r