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JAL-2371 skip upper-casing consensus as it already is
[jalview.git]
/
src
/
jalview
/
schemes
/
Blosum62ColourScheme.java
diff --git
a/src/jalview/schemes/Blosum62ColourScheme.java
b/src/jalview/schemes/Blosum62ColourScheme.java
index
53670e3
..
f35b886
100755
(executable)
--- a/
src/jalview/schemes/Blosum62ColourScheme.java
+++ b/
src/jalview/schemes/Blosum62ColourScheme.java
@@
-54,10
+54,9
@@
public class Blosum62ColourScheme extends ResidueColourScheme
String consensusResidue, float pid)
{
/*
String consensusResidue, float pid)
{
/*
- * compare as upper case; note toUpperCase does nothing
- * if the string is already uppercase
+ * compare as upper case; note consensusResidue is
+ * always computed as uppercase
*/
*/
- consensusResidue = consensusResidue.toUpperCase();
if ('a' <= res && res <= 'z')
{
res -= ('a' - 'A');
if ('a' <= res && res <= 'z')
{
res -= ('a' - 'A');