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aaIndex replaces aaHash
[jalview.git]
/
src
/
jalview
/
schemes
/
ClustalxColourScheme.java
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
9bc76c2
..
04610ef
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-86,8
+86,7
@@
public class ClustalxColourScheme
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
- res = ( (Integer) ResidueProperties.aaHash.get(seq.charAt(i) +
\r
- "")).intValue();
\r
+ res = ResidueProperties.aaIndex[seq.charAt(i)];
\r
}
\r
\r
cons2[i][res]++;
\r
}
\r
\r
cons2[i][res]++;
\r
@@
-258,7
+257,7
@@
public class ClustalxColourScheme
return Color.white;
\r
}
\r
\r
return Color.white;
\r
}
\r
\r
- int i = ( (Integer) ResidueProperties.aaHash.get(s)).intValue();
\r
+ int i = ResidueProperties.aaIndex[s.charAt(0)];
\r
\r
currentColour = Color.white;
\r
\r
\r
currentColour = Color.white;
\r
\r