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JAL-3468 Adapted methods to report how many features have been dropped from the toolt...
[jalview.git]
/
src
/
jalview
/
schemes
/
ClustalxColourScheme.java
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
3a9f8f7
..
19723ca
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-337,11
+337,10
@@
public class ClustalxColourScheme extends ResidueColourScheme
@Override
public ColourSchemeI getInstance(AlignViewportI view,
@Override
public ColourSchemeI getInstance(AlignViewportI view,
- AnnotatedCollectionI sg,
- Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+ AnnotatedCollectionI sg)
{
ClustalxColourScheme css = new ClustalxColourScheme(sg,
{
ClustalxColourScheme css = new ClustalxColourScheme(sg,
- hiddenRepSequences);
+ view == null ? null : view.getHiddenRepSequences());
css.includeGaps = includeGaps;
return css;
}
css.includeGaps = includeGaps;
return css;
}