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GRPAH_HEIGHT variable
[jalview.git]
/
src
/
jalview
/
schemes
/
ClustalxColourScheme.java
diff --git
a/src/jalview/schemes/ClustalxColourScheme.java
b/src/jalview/schemes/ClustalxColourScheme.java
index
d4789e6
..
2e4678e
100755
(executable)
--- a/
src/jalview/schemes/ClustalxColourScheme.java
+++ b/
src/jalview/schemes/ClustalxColourScheme.java
@@
-61,7
+61,8
@@
public class ClustalxColourScheme implements ColourSchemeI
while(j < seqs.size())
\r
{
\r
seq = ( (SequenceI) seqs.get(j)).getSequence();
\r
while(j < seqs.size())
\r
{
\r
seq = ( (SequenceI) seqs.get(j)).getSequence();
\r
- for (i = start; i <= end; i++)
\r
+ int end_j = seq.length()-1;
\r
+ for (i = start; i <= end_j; i++)
\r
{
\r
if(seq.length()-1<i)
\r
res = 23;
\r
{
\r
if(seq.length()-1<i)
\r
res = 23;
\r
@@
-230,7
+231,7
@@
public class ClustalxColourScheme implements ColourSchemeI
\r
Color c = Color.white;
\r
\r
\r
Color c = Color.white;
\r
\r
- if(i>20)
\r
+ if(i>19)
\r
return c;
\r
\r
for (int k=0; k < ResidueColour[i].conses.length ; k++)
\r
return c;
\r
\r
for (int k=0; k < ResidueColour[i].conses.length ; k++)
\r