git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2668 add tests for HMMER commands, annotation and io
[jalview.git]
/
src
/
jalview
/
schemes
/
HMMERColourScheme.java
diff --git
a/src/jalview/schemes/HMMERColourScheme.java
b/src/jalview/schemes/HMMERColourScheme.java
index
7a8ef94
..
f3691f0
100644
(file)
--- a/
src/jalview/schemes/HMMERColourScheme.java
+++ b/
src/jalview/schemes/HMMERColourScheme.java
@@
-79,13
+79,13
@@
public class HMMERColourScheme extends ResidueColourScheme
{
return new Color(230, 0, 0);
}
{
return new Color(230, 0, 0);
}
- Double value = Math.log(prob / freq) / Math.log(2);
+ Double value = Math.log(prob / freq);
Color colour = null;
if (value > 0)
{
colour = ColorUtils.getGraduatedColour(value.floatValue(), 0,
Color colour = null;
if (value > 0)
{
colour = ColorUtils.getGraduatedColour(value.floatValue(), 0,
- Color.WHITE, 6.52f, Color.blue);
+ Color.WHITE, 4.52f, Color.blue);
}
else if (value < 0)
{
}
else if (value < 0)
{