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JAL-2629 uniquify all hmmer command sequence outputs
[jalview.git]
/
src
/
jalview
/
schemes
/
HmmerColourScheme.java
diff --git
a/src/jalview/schemes/HmmerColourScheme.java
b/src/jalview/schemes/HmmerColourScheme.java
index
0f81ec1
..
05c9b66
100644
(file)
--- a/
src/jalview/schemes/HmmerColourScheme.java
+++ b/
src/jalview/schemes/HmmerColourScheme.java
@@
-1,8
+1,8
@@
package jalview.schemes;
package jalview.schemes;
+import jalview.api.AlignViewportI;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.HiddenMarkovModel;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.HiddenMarkovModel;
-import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
import jalview.util.ColorUtils;
import jalview.util.Comparison;
import jalview.datamodel.SequenceI;
import jalview.util.ColorUtils;
import jalview.util.Comparison;
@@
-145,8
+145,8
@@
public abstract class HmmerColourScheme extends ResidueColourScheme
* in ac that has an HMM
*/
@Override
* in ac that has an HMM
*/
@Override
- public ColourSchemeI getInstance(AnnotatedCollectionI ac,
- Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
+ public ColourSchemeI getInstance(AlignViewportI viewport,
+ AnnotatedCollectionI ac)
{
return newInstance(ac);
}
{
return newInstance(ac);
}