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JAL-3954 Create ParamDatastore builder for phmmer
[jalview.git]
/
src
/
jalview
/
schemes
/
JalviewColourScheme.java
diff --git
a/src/jalview/schemes/JalviewColourScheme.java
b/src/jalview/schemes/JalviewColourScheme.java
index
3d6d88d
..
a09b584
100644
(file)
--- a/
src/jalview/schemes/JalviewColourScheme.java
+++ b/
src/jalview/schemes/JalviewColourScheme.java
@@
-34,6
+34,10
@@
public enum JalviewColourScheme
PID("% Identity", PIDColourScheme.class),
Zappo("Zappo", ZappoColourScheme.class),
Taylor("Taylor", TaylorColourScheme.class),
PID("% Identity", PIDColourScheme.class),
Zappo("Zappo", ZappoColourScheme.class),
Taylor("Taylor", TaylorColourScheme.class),
+ Flower("gecos:flower", FlowerColourScheme.class),
+ Blossom("gecos:blossom", BlossomColourScheme.class),
+ Sunset("gecos:sunset", SunsetColourScheme.class),
+ Ocean("gecos:ocean", OceanColourScheme.class),
Hydrophobic("Hydrophobic", HydrophobicColourScheme.class),
Helix("Helix Propensity", HelixColourScheme.class),
Strand("Strand Propensity", StrandColourScheme.class),
Hydrophobic("Hydrophobic", HydrophobicColourScheme.class),
Helix("Helix Propensity", HelixColourScheme.class),
Strand("Strand Propensity", StrandColourScheme.class),
@@
-43,8
+47,10
@@
public enum JalviewColourScheme
PurinePyrimidine("Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
RNAHelices("RNA Helices", RNAHelicesColour.class),
TCoffee("T-Coffee Scores", TCoffeeColourScheme.class),
PurinePyrimidine("Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
RNAHelices("RNA Helices", RNAHelicesColour.class),
TCoffee("T-Coffee Scores", TCoffeeColourScheme.class),
- HMMERU("HMMER-Uniprot", HMMERColourScheme.class),
- HMMERA("HMMER-Alignment", HMMERAlignmentColourScheme.class);
+ IdColour("Sequence ID", IdColourScheme.class),
+ HMMERU("HMMER-Uniprot", HmmerGlobalBackground.class),
+ HMMERA("HMMER-Alignment", HmmerLocalBackground.class),
+ HMMMatchScore("HMM Match Score", HMMMatchScoreColourScheme.class);
// RNAInteraction("RNA Interaction type", RNAInteractionColourScheme.class)
private String name;
// RNAInteraction("RNA Interaction type", RNAInteractionColourScheme.class)
private String name;