- if (threshold == 0 || aboveThreshold( n, j))\r
- try\r
- {\r
- return colors[ ( (Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];\r
- }\r
- catch (Exception ex)\r
- {\r
- return Color.white;\r
- }\r
- else\r
- return Color.white;\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param n DOCUMENT ME!\r
+ * @param j DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
+ public Color findColour(String n, int j)\r
+ {\r
+ Color currentColour;\r
+ if ((threshold == 0) || aboveThreshold(n, j))\r
+ {\r
+ try\r
+ {\r
+ currentColour = colors[ ResidueProperties.nucleotideIndex[n.charAt(0)]];\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ return Color.white;\r
+ }\r
+ }\r
+ else\r
+ {\r
+ return Color.white;\r
+ }\r