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[jalview.git]
/
src
/
jalview
/
schemes
/
NucleotideColourScheme.java
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
0e2ecff
..
78d34e2
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-17,7
+17,9
@@
*/
package jalview.schemes;
*/
package jalview.schemes;
-import java.awt.*;
+import jalview.datamodel.SequenceI;
+
+import java.awt.Color;
/**
* DOCUMENT ME!
/**
* DOCUMENT ME!
@@
-32,7
+34,7
@@
public class NucleotideColourScheme extends ResidueColourScheme
*/
public NucleotideColourScheme()
{
*/
public NucleotideColourScheme()
{
- super(ResidueProperties.nucleotide, 0);
+ super(ResidueProperties.nucleotideIndex, ResidueProperties.nucleotide, 0);
}
/**
}
/**
@@
-43,6
+45,7
@@
public class NucleotideColourScheme extends ResidueColourScheme
*
* @return DOCUMENT ME!
*/
*
* @return DOCUMENT ME!
*/
+ @Override
public Color findColour(char c)
{
// System.out.println("called"); log.debug
public Color findColour(char c)
{
// System.out.println("called"); log.debug
@@
-59,7
+62,8
@@
public class NucleotideColourScheme extends ResidueColourScheme
*
* @return DOCUMENT ME!
*/
*
* @return DOCUMENT ME!
*/
- public Color findColour(char c, int j)
+ @Override
+ public Color findColour(char c, int j, SequenceI seq)
{
Color currentColour;
if ((threshold == 0) || aboveThreshold(c, j))
{
Color currentColour;
if ((threshold == 0) || aboveThreshold(c, j))