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conservation removed
[jalview.git]
/
src
/
jalview
/
schemes
/
NucleotideColourScheme.java
diff --git
a/src/jalview/schemes/NucleotideColourScheme.java
b/src/jalview/schemes/NucleotideColourScheme.java
index
caa6998
..
dc06175
100755
(executable)
--- a/
src/jalview/schemes/NucleotideColourScheme.java
+++ b/
src/jalview/schemes/NucleotideColourScheme.java
@@
-1,8
+1,6
@@
package jalview.schemes;
\r
\r
import java.awt.*;
\r
package jalview.schemes;
\r
\r
import java.awt.*;
\r
-import java.util.*;
\r
-
\r
\r
public class NucleotideColourScheme extends ResidueColourScheme
\r
{
\r
\r
public class NucleotideColourScheme extends ResidueColourScheme
\r
{
\r
@@
-18,9
+16,9
@@
public class NucleotideColourScheme extends ResidueColourScheme
}
\r
\r
\r
}
\r
\r
\r
- public Color findColour(String n, int j, Vector aa) {
\r
+ public Color findColour(String n, int j) {
\r
\r
\r
- if (threshold == 0 || aboveThreshold(aa, n, j))
\r
+ if (threshold == 0 || aboveThreshold( n, j))
\r
try
\r
{
\r
return colors[ ( (Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];
\r
try
\r
{
\r
return colors[ ( (Integer) (ResidueProperties.nucleotideHash.get(n))).intValue()];
\r