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JAL-1065 JAL-1066 - use direct object reference rather then index into alignment
[jalview.git]
/
src
/
jalview
/
schemes
/
PIDColourScheme.java
diff --git
a/src/jalview/schemes/PIDColourScheme.java
b/src/jalview/schemes/PIDColourScheme.java
index
c4f7eb5
..
a64bf20
100755
(executable)
--- a/
src/jalview/schemes/PIDColourScheme.java
+++ b/
src/jalview/schemes/PIDColourScheme.java
@@
-19,6
+19,7
@@
package jalview.schemes;
import jalview.analysis.AAFrequency;
import jalview.datamodel.SequenceGroup;
import jalview.analysis.AAFrequency;
import jalview.datamodel.SequenceGroup;
+import jalview.datamodel.SequenceI;
import java.awt.Color;
import java.awt.Color;
@@
-38,7
+39,7
@@
public class PIDColourScheme extends ResidueColourScheme
@Override
@Override
- public Color findColour(char c, int j, int sequenceIndex)
+ public Color findColour(char c, int j, SequenceI seq)
{
if ('a' <= c && c <= 'z')
{
{
if ('a' <= c && c <= 'z')
{