- rhc = new RNAHelicesColour(currentAnnotation);
-
- av.setGlobalColourScheme(rhc);
-
- if (av.getAlignment().getGroups() != null)
- {
- for (SequenceGroup sg:ap.getAlignment().getGroups())
- {
- if (sg.cs == null)
- {
- continue;
- }
-
- sg.cs = new RNAHelicesColour(currentAnnotation);