int index = ResidueProperties.aaIndex[s.charAt(0)];\r
\r
if ((threshold == 0) || aboveThreshold(ResidueProperties.aa[index], j))\r
int index = ResidueProperties.aaIndex[s.charAt(0)];\r
\r
if ((threshold == 0) || aboveThreshold(ResidueProperties.aa[index], j))\r
- if ((((Integer) consensus[j].get(AAFrequency.MAXCOUNT)).intValue() != -1) &&\r
- consensus[j].contains(s))\r
+ if ( ( ( (Integer) consensus[j].get(AAFrequency.MAXCOUNT)).intValue() != -1) &&\r
+ consensus[j].contains(s))\r