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indicate the database id source associated with the sequences being submitted.
[jalview.git]
/
src
/
jalview
/
schemes
/
ResidueProperties.java
diff --git
a/src/jalview/schemes/ResidueProperties.java
b/src/jalview/schemes/ResidueProperties.java
index
ff73050
..
a53b95f
100755
(executable)
--- a/
src/jalview/schemes/ResidueProperties.java
+++ b/
src/jalview/schemes/ResidueProperties.java
@@
-1,6
+1,6
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
@@
-945,7
+945,7
@@
public class ResidueProperties
charged.put("E", new Integer(1));
charged.put("Q", new Integer(0));
charged.put("D", new Integer(1));
charged.put("E", new Integer(1));
charged.put("Q", new Integer(0));
charged.put("D", new Integer(1));
- charged.put("N", new Integer(1));
+ charged.put("N", new Integer(0)); // Asparagine is polar but not charged. Alternative would be charged and negative (in basic form)?
charged.put("S", new Integer(0));
charged.put("T", new Integer(0));
charged.put("P", new Integer(0));
charged.put("S", new Integer(0));
charged.put("T", new Integer(0));
charged.put("P", new Integer(0));