+ nucleotideHash.put("I", new Integer(5));\r
+ nucleotideHash.put("i", new Integer(5));\r
+ nucleotideHash.put("X", new Integer(6));\r
+ nucleotideHash.put("x", new Integer(6));\r
+ nucleotideHash.put("R", new Integer(7));\r
+ nucleotideHash.put("r", new Integer(7));\r
+ nucleotideHash.put("Y", new Integer(8));\r
+ nucleotideHash.put("y", new Integer(8));\r
+ nucleotideHash.put("N", new Integer(9));\r
+ nucleotideHash.put("n", new Integer(9));\r
+\r
+\r
+ nucleotideName.put("A", "Adenine");\r
+ nucleotideName.put("a", "Adenine");\r
+ nucleotideName.put("G", "Guanine");\r
+ nucleotideName.put("g", "Guanine");\r
+ nucleotideName.put("C", "Cytosine");\r
+ nucleotideName.put("c", "Cytosine");\r
+ nucleotideName.put("T", "Thymine");\r
+ nucleotideName.put("t", "Thymine");\r
+ nucleotideName.put("U", "Uracil");\r
+ nucleotideName.put("u", "Uracil");\r
+ nucleotideName.put("I", "Inosine");\r
+ nucleotideName.put("i", "Inosine");\r
+ nucleotideName.put("X", "Xanthine");\r
+ nucleotideName.put("x", "Xanthine");\r
+ nucleotideName.put("R", "Unknown Purine");\r
+ nucleotideName.put("r", "Unknown Purine");\r
+ nucleotideName.put("Y", "Unknown Pyrimidine");\r
+ nucleotideName.put("y", "Unknown Pyrimidine");\r
+ nucleotideName.put("N", "Unknown");\r
+ nucleotideName.put("n", "Unknown");\r