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[jalview.git]
/
src
/
jalview
/
schemes
/
ScoreColourScheme.java
diff --git
a/src/jalview/schemes/ScoreColourScheme.java
b/src/jalview/schemes/ScoreColourScheme.java
index
c11e1ec
..
1f9116c
100755
(executable)
--- a/
src/jalview/schemes/ScoreColourScheme.java
+++ b/
src/jalview/schemes/ScoreColourScheme.java
@@
-1,6
+1,6
@@
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
/*
\r
* Jalview - A Sequence Alignment Editor and Viewer
\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
*
\r
* This program is free software; you can redistribute it and/or
\r
* modify it under the terms of the GNU General Public License
\r
@@
-94,12
+94,12
@@
public class ScoreColourScheme extends ResidueColourScheme
\r
char c = s.charAt(0);
\r
\r
\r
char c = s.charAt(0);
\r
\r
- if (jalview.util.Comparison.isGap((c)))
\r
+ if (jalview.util.Comparison.isGap(c))
\r
{
\r
return Color.white;
\r
}
\r
\r
{
\r
return Color.white;
\r
}
\r
\r
- currentColour = colors[((Integer) ResidueProperties.aaHash.get(s)).intValue()];
\r
+ currentColour = colors[ ResidueProperties.aaIndex[c] ];
\r
\r
if(conservationColouring)
\r
applyConservation(j);
\r
\r
if(conservationColouring)
\r
applyConservation(j);
\r