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JAL-1065 JAL-1066 - use direct object reference rather then index into alignment
[jalview.git]
/
src
/
jalview
/
schemes
/
UserColourScheme.java
diff --git
a/src/jalview/schemes/UserColourScheme.java
b/src/jalview/schemes/UserColourScheme.java
index
0c1e688
..
62dfec5
100755
(executable)
--- a/
src/jalview/schemes/UserColourScheme.java
+++ b/
src/jalview/schemes/UserColourScheme.java
@@
-19,6
+19,7
@@
package jalview.schemes;
import java.awt.Color;
import java.util.StringTokenizer;
import java.awt.Color;
import java.util.StringTokenizer;
+import jalview.datamodel.SequenceI;
public class UserColourScheme extends ResidueColourScheme
{
public class UserColourScheme extends ResidueColourScheme
{
@@
-201,7
+202,7
@@
public class UserColourScheme extends ResidueColourScheme
}
@Override
}
@Override
- public Color findColour(char c, int j, int sequenceIndex)
+ public Color findColour(char c, int j, SequenceI seq)
{
Color currentColour;
int index = ResidueProperties.aaIndex[c];
{
Color currentColour;
int index = ResidueProperties.aaIndex[c];