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JAL-674 use the getMapping/transfer to transfer annotation when creating a mapping...
[jalview.git]
/
src
/
jalview
/
structure
/
StructureSelectionManager.java
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
7a1b100
..
017bae9
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-380,7
+380,10
@@
public class StructureSelectionManager
+ (maxAlignseq.seq1end + sequence[s].getEnd() - 1));
maxChain.makeExactMapping(maxAlignseq, sequence[s]);
+ (maxAlignseq.seq1end + sequence[s].getEnd() - 1));
maxChain.makeExactMapping(maxAlignseq, sequence[s]);
-
+ jalview.datamodel.Mapping sqmpping = maxAlignseq
+ .getMappingFromS1(false);
+ jalview.datamodel.Mapping omap = new jalview.datamodel.Mapping(
+ sqmpping.getMap().getInverse());
maxChain.transferRESNUMFeatures(sequence[s], null);
// allocate enough slots to store the mapping from positions in
maxChain.transferRESNUMFeatures(sequence[s], null);
// allocate enough slots to store the mapping from positions in
@@
-426,7
+429,7
@@
public class StructureSelectionManager
mappings[mappings.length - 1] = newMapping;
}
mappings[mappings.length - 1] = newMapping;
}
- maxChain.transferResidueAnnotation(newMapping);
+ maxChain.transferResidueAnnotation(newMapping, sqmpping);
}
// ///////
}
// ///////