- public final static String NEWLINE = System.lineSeparator();
-
- // BH unnecessary; IdentityHashMap can handle this
- // private static StructureSelectionManager nullProvider;
-
- private List<StructureMapping> mappings = new ArrayList<>();
-
- private boolean processSecondaryStructure = false;
-
- private boolean secStructServices = false;
-
- private boolean addTempFacAnnot = false;
-
- /*
- * Set of any registered mappings between (dataset) sequences.
- */
- private List<AlignedCodonFrame> seqmappings = new ArrayList<>();
-
- private List<CommandListener> commandListeners = new ArrayList<>();
-
- private List<SelectionListener> sel_listeners = new ArrayList<>();
-