- StructureMapping nwMapping = getNWMappings(seq, pdbFile,
- targetChainId, maxChain, pdb, maxAlignseq);
- seqToStrucMapping.add(nwMapping);
- maxChain.makeExactMapping(maxAlignseq, seq);
- maxChain.transferRESNUMFeatures(seq, "IEA:Jalview",
- pdb.getId().toLowerCase(Locale.ROOT)); // FIXME: is
- // this
- // "IEA:Jalview" ?
- maxChain.transferResidueAnnotation(nwMapping, sqmpping);
- ds.addPDBId(maxChain.sequence.getAllPDBEntries().get(0));