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JAL-1648 House keeping
[jalview.git]
/
src
/
jalview
/
structure
/
StructureSelectionManager.java
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
7519538
..
3ab642f
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-589,11
+589,9
@@
public class StructureSelectionManager
return pdb;
}
return pdb;
}
- private boolean isCIFFile(String filename)
+ public void addStructureMapping(StructureMapping sm)
{
{
- String fileExt = filename.substring(filename.lastIndexOf(".") + 1,
- filename.length());
- return "cif".equalsIgnoreCase(fileExt);
+ mappings.add(sm);
}
/**
}
/**
@@
-824,10
+822,10
@@
public class StructureSelectionManager
* @param atoms
* @return
*/
* @param atoms
* @return
*/
- public SearchResults findAlignmentPositionsForStructurePositions(
+ public SearchResultsI findAlignmentPositionsForStructurePositions(
List<AtomSpec> atoms)
{
List<AtomSpec> atoms)
{
- SearchResults results = new SearchResults();
+ SearchResultsI results = new SearchResults();
for (AtomSpec atom : atoms)
{
SequenceI lastseq = null;
for (AtomSpec atom : atoms)
{
SequenceI lastseq = null;