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JAL-3466 higher ‘crummy alignment’ threshold when deciding to create an identity...
[jalview.git]
/
src
/
jalview
/
structure
/
StructureSelectionManager.java
diff --git
a/src/jalview/structure/StructureSelectionManager.java
b/src/jalview/structure/StructureSelectionManager.java
index
6761cc3
..
9906582
100644
(file)
--- a/
src/jalview/structure/StructureSelectionManager.java
+++ b/
src/jalview/structure/StructureSelectionManager.java
@@
-673,7
+673,7
@@
public class StructureSelectionManager
// Not doing SIFTS, or SIFTS failed for some reason.
// first check if we should use an identity mapping
// Not doing SIFTS, or SIFTS failed for some reason.
// first check if we should use an identity mapping
- if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.5)
+ if (idLengthChain != null && maxAlignseq.getS2Coverage() < 0.75)
{
Console.info(
"Assuming 3Dsi identity mapping between structure and sequence");
{
Console.info(
"Assuming 3Dsi identity mapping between structure and sequence");