- * @param tft - specify how to interpret the temperature factor column in the atom data
- * @param paeFilename - when not null, specifies a filename containing a matrix formatted in JSON using one of the known PAE formats
- * @param doXferSettings - when true, transfer annotation to mapped sequences in sequenceArray
+ * @param tft
+ * - specify how to interpret the temperature factor column in the
+ * atom data
+ * @param paeFilename
+ * - when not null, specifies a filename containing a matrix
+ * formatted in JSON using one of the known PAE formats
+ * @param doXferSettings
+ * - when true, transfer annotation to mapped sequences in
+ * sequenceArray