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JAL-2385 tweak to applet 'switch colour slider context'
[jalview.git]
/
src
/
jalview
/
structures
/
models
/
AAStructureBindingModel.java
diff --git
a/src/jalview/structures/models/AAStructureBindingModel.java
b/src/jalview/structures/models/AAStructureBindingModel.java
index
5dc3465
..
063eacf
100644
(file)
--- a/
src/jalview/structures/models/AAStructureBindingModel.java
+++ b/
src/jalview/structures/models/AAStructureBindingModel.java
@@
-21,9
+21,11
@@
package jalview.structures.models;
import jalview.api.StructureSelectionManagerProvider;
package jalview.structures.models;
import jalview.api.StructureSelectionManagerProvider;
+import jalview.api.structures.JalviewStructureDisplayI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
import jalview.structure.AtomSpec;
import jalview.structure.StructureListener;
import jalview.structure.StructureMapping;
import jalview.structure.AtomSpec;
import jalview.structure.StructureListener;
import jalview.structure.StructureMapping;
@@
-70,7
+72,7
@@
public abstract class AAStructureBindingModel extends
/*
* datasource protocol for access to PDBEntrylatest
*/
/*
* datasource protocol for access to PDBEntrylatest
*/
- String protocol = null;
+ DataSourceType protocol = null;
protected boolean colourBySequence = true;
protected boolean colourBySequence = true;
@@
-136,7
+138,7
@@
public abstract class AAStructureBindingModel extends
*/
public AAStructureBindingModel(StructureSelectionManager ssm,
PDBEntry[] pdbentry, SequenceI[][] sequenceIs,
*/
public AAStructureBindingModel(StructureSelectionManager ssm,
PDBEntry[] pdbentry, SequenceI[][] sequenceIs,
- String protocol)
+ DataSourceType protocol)
{
this.ssm = ssm;
this.sequence = sequenceIs;
{
this.ssm = ssm;
this.sequence = sequenceIs;
@@
-202,7
+204,7
@@
public abstract class AAStructureBindingModel extends
return chains;
}
return chains;
}
- public String getProtocol()
+ public DataSourceType getProtocol()
{
return protocol;
}
{
return protocol;
}
@@
-677,4
+679,13
@@
public abstract class AAStructureBindingModel extends
*/
public abstract List<String> getChainNames();
*/
public abstract List<String> getChainNames();
+ /**
+ * Returns the Jalview panel hosting the structure viewer (if any)
+ *
+ * @return
+ */
+ public JalviewStructureDisplayI getViewer()
+ {
+ return null;
+ }
}
}