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JAL-3330 merge styles onto originating views when show cross-refs performed (should...
[jalview.git]
/
src
/
jalview
/
structures
/
models
/
AAStructureBindingModel.java
diff --git
a/src/jalview/structures/models/AAStructureBindingModel.java
b/src/jalview/structures/models/AAStructureBindingModel.java
index
a3c4beb
..
2528286
100644
(file)
--- a/
src/jalview/structures/models/AAStructureBindingModel.java
+++ b/
src/jalview/structures/models/AAStructureBindingModel.java
@@
-162,6
+162,8
@@
public abstract class AAStructureBindingModel
* final count of chain mappings discovered
*/
int chainmaps = 0;
* final count of chain mappings discovered
*/
int chainmaps = 0;
+ // JBPNote: JAL-2693 - this should be a list of chain mappings per
+ // [pdbentry][sequence]
String[][] newchains = new String[pdbEntry.length][];
int pe = 0;
for (PDBEntry pdb : pdbEntry)
String[][] newchains = new String[pdbEntry.length][];
int pe = 0;
for (PDBEntry pdb : pdbEntry)
@@
-176,7
+178,8
@@
public abstract class AAStructureBindingModel
String chain = (chains != null && chains[pe] != null)
? chains[pe][se]
: null;
String chain = (chains != null && chains[pe] != null)
? chains[pe][se]
: null;
- SequenceI sq = asq.getDatasetSequence();
+ SequenceI sq = (asq.getDatasetSequence() == null) ? asq
+ : asq.getDatasetSequence();
if (sq.getAllPDBEntries() != null)
{
for (PDBEntry pdbentry : sq.getAllPDBEntries())
if (sq.getAllPDBEntries() != null)
{
for (PDBEntry pdbentry : sq.getAllPDBEntries())